События второго сезона разворачиваются сразу за первым, после летних каникул в последнем семестре обучения Томоя в старшей школе.

Томоя [岡崎 朋也] признался в любви Нагисе [古河 渚], и теперь у них началась совместная жизнь. Но как не бывает света без тени, так не бывает и счастья без горя. Впереди героев ждут тяжелые испытания и потрясения...

Tomoya Okazaki and Nagisa Furukawa have graduated from high school, and together, they experience the emotional rollercoaster of growing up. Unable to decide on a course for his future, Tomoya learns the value of a strong work ethic and discovers the strength of Nagisa's support. Through the couple's dedication and unity of purpose, they push forward to confront their personal problems, deepen their old relationships, and create new bonds.

Time also moves on in the Illusionary World. As the plains grow cold with the approach of winter, the Illusionary Girl and the Garbage Doll are presented with a difficult situation that reveals the World's true purpose.

[Written by MAL Rewrite]